My recommendation? No. Don’t.
I’m an ex Windows user, current Linux and Mac user. Keyboard shortcuts on Linux are much closer to Windows conventions compared to macOS. I wouldn’t recommend using a Mac keyboard with Linux. I’d only recommend it if you want to use both Linux and macOS with the same keyboard (you will be happier in this case, because using macOS with a Windows keyboard sucks, vice versa).
If you don’t like the Windows key design, get a keyboard with a custom one.
This does not sound sustainable at all.